PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g015540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 440aa    MW: 48504.2 Da    PI: 4.8103
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g015540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.99.6e-085302046
                     TTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqk 46
                      ++ W+  a++++ gRt++++k++w++
   Csa19g015540.1  5 VSRKWAQMAEHLP-GRTDNEIKNYWNT 30
                     5678*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.23136IPR017930Myb domain
CDDcd001674.45E-6230No hitNo description
PfamPF002496.3E-6330IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-12433IPR009057Homeodomain-like
SuperFamilySSF466892.94E-6635IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MAEHVSRKWA QMAEHLPGRT DNEIKNYWNT RIKRRQRAGL PLYPPEIHVE DLQWSEEDTK  60
SNIIRVDRRR RQDFLQLGNS KANLLFDDLS FAASLLPAAS DLSDLVACNM LGTGASSSWY  120
ESYMPPILPS PKQLWDSGSR FPMCSSNIKH EVQSPEYFQD TASQKNPRSF SISPCYVDHP  180
PYGNQHSSDM MMILDSHTLT DGMLPTSKPS FGAVKLELPS FQYSETSAFD QWKATPSPPH  240
SDLLDSVDAY IQSPPPSEIE ESDCFSSCDT GLLDMLLHEA KIKTSAKHSL LSSSPEKSFS  300
STTCTTDATQ NVPRSQIKPG ELENFQMNLT RSEISIPSQL SAGGISSGNF VKTEEVDQVW  360
EPKRVDMTRP DVLLASSWLD QGCYGIVRDT SSMSDALALL LGGDDIGNSY VTVGSSSGQA  420
PRGGVGSCGW TNMPPVWSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195850.0AY519585.1 Arabidopsis thaliana MYB transcription factor (At3g11440) mRNA, complete cds.
GenBankBT0039400.0BT003940.1 Arabidopsis thaliana clone RAFL15-06-P04 (R20731) putative Myb DNA-binding protein (At3g11440) mRNA, complete cds.
GenBankBT0051200.0BT005120.1 Arabidopsis thaliana clone U20731 putative Myb DNA-binding protein (At3g11440) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495790.10.0PREDICTED: transcription factor GAMYB-like
TrEMBLR0G4540.0R0G454_9BRAS; Transcription factor
STRINGfgenesh2_kg.3__1182__AT3G11440.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38022859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.10.0myb domain protein 65